ovoshchiОвощи РоссииVegetable crops of Russia2072-91462618-7132Федеральный научный центр овощеводства10.18619/2072-9146-2019-6-24-26ovoshchi-914Research ArticleСЕЛЕКЦИЯ И СЕМЕНОВОДСТВО СЕЛЬСКОХОЗЯЙСТВЕННЫХ РАСТЕНИЙBREEDING AND SEED PRODUCTION OF AGRICULTURAL CROPSПрименимость маркеров ISAP, ISSR и SSR в селекционных программах томатаApplicability of ISAP, ISSR and SSR markers in tomato breeding programsПанчевИ.PantchevI.

Кафедра биохимии, 

8, Драган Цанков, 1164 София

Department of Biochemistry, 

8, Dragan Tzankov, 1164 Sofia

https://orcid.org/0000-0003-3399-6353АзизС.AzizS.

Брезнишко шоссе, 32, Пловдив, 4000

32, Brezovsko shosse, 4000 Plovdiv

nasia.tomlekova@gmail.comhttps://orcid.org/0000-0003-2771-7418СарсуФ.SarsuF.

Секция по селекции и генетике растений,

5, Ваграмер штрассе, 1400 Вена

Section of Plant Breeding and Genetics,

5, Wagramer Strasse, 1400 Vienna

https://orcid.org/0000-0003-0965-170XТомлековаН.TomlekovaN.

Брезнишко шоссе, 32, Пловдив, 4000

32, Brezovsko shosse, 4000 Plovdiv

nasia.tomlekova@gmail.comСофийский университетБолгарияSofia UniversityBulgariaНИИ овощеводства МарицаБолгарияMaritsa Vegetable Crops Research InstituteBulgariaМеждународное агентство по атомной энергииАвстрияInternational Atomic Energy AgencyAustria201918122019062426Copyright © Панчев И., Азиз С., Сарсу Ф., Томлекова Н., 20192019Панчев И., Азиз С., Сарсу Ф., Томлекова Н.Pantchev I., Aziz S., Sarsu F., Tomlekova N.Данная работа распространяется под лицензией Creative Commons Attribution 4.0.This work is licensed under a Creative Commons Attribution 4.0 License.https://www.vegetables.su/jour/article/view/914

За время тысячелетней селекции культурные растения характеризуются зауженностью генетической основы, отражающейся в одном и нескольких эффектах "бутылочного горлышка". В результате направленной селекционной работы потенциал имеющихся генетических ресурсов становится ограниченным, и требуется дальнейшая работа по поиску генресурсов для улучшения урожайности, устойчивости, пищевой ценности и т.д. С открытием современных методов генетики и биотехнологии некоторые достижения уже используются для улучшения потенциального использование генетических ресурсов. Среди этих методов индуцированный мутагенез можно рассматривать как наиболее полезный для традиционной селекции, хотя его широкое использование требует хороших знаний в области современных молекулярных технологий. В данной публикации мы сделали обзор по использованию SSR, ISSR и ISAP методов и привели примеры их конкретного применения в селекции томата.

Domesticated crops are characterized by narrow genetic base reflecting one or more bottlenecks during millennia-long selection. As a result, current breeding programs are limited in available germplasm and are forced to deal with incremental improvements of yield, resistance, nutritional value, etc. Since the establishment of modern genetics and biotechnology, several new approaches have emerged to extend the genetic base and germplasm improvement. Among these methods, induced mutagenesis appeared as most useful conventional breeding tool. Although, its successful application currently requires good knowledge of modern molecular tools. In this paper we will make an attempt to overview SSR, ISSR and ISAP techniques as well as to offer examples of their application in tomato breeding programs.

томатмаркер-ассоциированная селекцияиндуцированный мутагенезмикросателлитыISAPtomatomarker-assisted selectioninduced mutagenesismicrosatellitesISAPРабота выполнена при поддержке участия в Международной конференции, финансируемой Российским фондом фундаментальных исследований, проект № 19-016-20005.ReferencesFentik DA. Review on Genetics and Breeding of Tomato (Lycopersicon esculentum Mill). Adv Crop Sci Tech. 2017;5:306.Fentik DA. Review on Genetics and Breeding of Tomato (Lycopersicon esculentum Mill). Adv Crop Sci Tech. 2017;5:306.Lin T, Zhu G, Zhang J et al. Genomic analyses provide insights into the history of tomato breeding. Nature Genetics. 2014;46:1220-1226.Lin T, Zhu G, Zhang J et al. Genomic analyses provide insights into the history of tomato breeding. Nature Genetics. 2014;46:1220-1226.Blanca J, Montero-Pau J, Sauvage C et al. Genomic variation in tomato, from wild ancestors to contemporary breeding accessions. BMC Genomics. 2015;16(1):257.Blanca J, Montero-Pau J, Sauvage C et al. Genomic variation in tomato, from wild ancestors to contemporary breeding accessions. BMC Genomics. 2015;16(1):257.Mohan V, Gupta S, Thomas S et al. Tomato fruits show wide phenomic diversity but fruit developmental genes show low genomic diversity. PLoS ONE. 2016;11(4):e0152907.Mohan V, Gupta S, Thomas S et al. Tomato fruits show wide phenomic diversity but fruit developmental genes show low genomic diversity. PLoS ONE. 2016;11(4):e0152907.Kalloo G. Genetic improvement of tomato. Springer Science & Business Media; 2012.Kalloo G. Genetic improvement of tomato. Springer Science & Business Media; 2012.Minmin D, Ming Z, Lei D et al. Current status and prospects on tomato molecular breeding-from gene cloning to cultivar improvement. Acta Horticulturae Sinica. 2017;44(3):581–600.Minmin D, Ming Z, Lei D et al. Current status and prospects on tomato molecular breeding-from gene cloning to cultivar improvement. Acta Horticulturae Sinica. 2017;44(3):581–600.Kulus D. Tomato molecular breeding – a mini-review of latest achievements. Nauka Przyr. Technol. 2018;12(1):65-72.Kulus D. Tomato molecular breeding – a mini-review of latest achievements. Nauka Przyr. Technol. 2018;12(1):65-72.Saliba-Colombani V, Causse M, Gervais L, Philouze J. Efficiency of RFLP, RAPD, and AFLP markers for the construction of an intraspecific map of the tomato genome. Genome. 2000;43(1):29-40.Saliba-Colombani V, Causse M, Gervais L, Philouze J. Efficiency of RFLP, RAPD, and AFLP markers for the construction of an intraspecific map of the tomato genome. Genome. 2000;43(1):29-40.Suliman-Pollatschek S, Kashkush K, Shats H, Hillel J, Lavi U. Generation and mapping of AFLP, SSRs and SNPs in Lycopersicon esculentum. Cell Mol Biol Lett. 2002;7(2A):583-597.Suliman-Pollatschek S, Kashkush K, Shats H, Hillel J, Lavi U. Generation and mapping of AFLP, SSRs and SNPs in Lycopersicon esculentum. Cell Mol Biol Lett. 2002;7(2A):583-597.He C, Poysa V,•Yu K. Development and characterization of simple sequence repeat (SSR) markers and their use in determining relationships among Lycopersicon esculentum cultivars. Theor Appl Genet. 2003;106:363–373.He C, Poysa V,•Yu K. Development and characterization of simple sequence repeat (SSR) markers and their use in determining relationships among Lycopersicon esculentum cultivars. Theor Appl Genet. 2003;106:363–373.Garcнa-Martнnez S, Andreani L, Garcia-Gusano M et al. Evaluation of amplified fragment length polymorphism and simple sequence repeats for tomato germplasm fingerprinting: utility for grouping closely related traditional cultivars. Genome. 2006;49(6):648-656.Garcнa-Martнnez S, Andreani L, Garcia-Gusano M et al. Evaluation of amplified fragment length polymorphism and simple sequence repeats for tomato germplasm fingerprinting: utility for grouping closely related traditional cultivars. Genome. 2006;49(6):648-656.Foolad MR. Genome Mapping and Molecular Breeding of Tomato. Int J Plant Genomics. 2007: 64358.Foolad MR. Genome Mapping and Molecular Breeding of Tomato. Int J Plant Genomics. 2007: 64358.Foolad MR, Panthee DR. Marker-assisted selection in tomato breeding. Critical reviews in Plant Sciences. 2012;31 93-123.Foolad MR, Panthee DR. Marker-assisted selection in tomato breeding. Critical reviews in Plant Sciences. 2012;31 93-123.Iquebal MA, Sarika, Arora V et al. First whole genome based microsatellite DNA marker database of tomato for mapping and variety identification. BMC Plant Biology. 2013;13:197.Iquebal MA, Sarika, Arora V et al. First whole genome based microsatellite DNA marker database of tomato for mapping and variety identification. BMC Plant Biology. 2013;13:197.Osei MK, Prempeh R, Adjebeng-Danquah J et al. Marker-Assisted Selection (MAS): A Fast-Track Tool in Tomato Breeding, In: Recent Advances in Tomato Breeding and Production (Nyaku ST and A Danquah, Eds.), InTechOpen, 2018.Osei MK, Prempeh R, Adjebeng-Danquah J et al. Marker-Assisted Selection (MAS): A Fast-Track Tool in Tomato Breeding, In: Recent Advances in Tomato Breeding and Production (Nyaku ST and A Danquah, Eds.), InTechOpen, 2018.Benor S, Zhang M, Wang Z, Zhang H. Assessment of genetic variation in tomato (Solanum lycopersicum L.) inbred lines using SSR molecular markers. J Genet Genomics. 2008;35:373−379.Benor S, Zhang M, Wang Z, Zhang H. Assessment of genetic variation in tomato (Solanum lycopersicum L.) inbred lines using SSR molecular markers. J Genet Genomics. 2008;35:373−379.Aguirre NC, Lуpez W, Orozco-Cбrdenas M, Coronado YM Vallejo-Cabrera F. Use of microsatellites for evaluation of genetic diversity in cherry tomato. Bragantia. 2017;76(2):220-228.Aguirre NC, Lуpez W, Orozco-Cбrdenas M, Coronado YM Vallejo-Cabrera F. Use of microsatellites for evaluation of genetic diversity in cherry tomato. Bragantia. 2017;76(2):220-228.Kaushal A, Singh A, Jeena AS. Genetic diversity in tomato (Solanum lycopersicum L.) genotypes revealed by simple sequence repeats (SSR) markers. J Appl Natural Sci. 2017;9(2):966–973.Kaushal A, Singh A, Jeena AS. Genetic diversity in tomato (Solanum lycopersicum L.) genotypes revealed by simple sequence repeats (SSR) markers. J Appl Natural Sci. 2017;9(2):966–973.Carli P, Barone A, Fogliano V et al. Dissection of genetic and environmental factors involved in tomato organoleptic quality. BMC Plant Biology. 2011;11:58.Carli P, Barone A, Fogliano V et al. Dissection of genetic and environmental factors involved in tomato organoleptic quality. BMC Plant Biology. 2011;11:58.Velpula P, Parihar D, Pinnamaneni R Identification of linked markers for delayed fruit ripening in tomato using simple sequence repeat (SSR) markers. J Plant Mol Breeding. 2016;4(2):26-32.Velpula P, Parihar D, Pinnamaneni R Identification of linked markers for delayed fruit ripening in tomato using simple sequence repeat (SSR) markers. J Plant Mol Breeding. 2016;4(2):26-32.Bramley PM. The regulation and genetic manipulation of carotenoid biosynthesis in tomato fruit. Pure Appl Chem. 1997;69(10):2159-2162.Bramley PM. The regulation and genetic manipulation of carotenoid biosynthesis in tomato fruit. Pure Appl Chem. 1997;69(10):2159-2162.Liu L, Shao Z, Zhang M, Wang Q. Regulation of carotenoid metabolism in tomato. Mol Plant. 2015;8(1):28-39.Liu L, Shao Z, Zhang M, Wang Q. Regulation of carotenoid metabolism in tomato. Mol Plant. 2015;8(1):28-39.Danailov Z. Main Trends of Tomato Breeding Development. Plant Breeding Sciences, Bulgaria, 2012.Danailov Z. Main Trends of Tomato Breeding Development. Plant Breeding Sciences, Bulgaria, 2012.Manoharan RK, Jung H-L, Hwang I et al. Molecular breeding of a novel orangebrown tomato fruit with enhanced beta-carotene and chlorophyll accumulation. Hereditas. 2017;154:1.Manoharan RK, Jung H-L, Hwang I et al. Molecular breeding of a novel orangebrown tomato fruit with enhanced beta-carotene and chlorophyll accumulation. Hereditas. 2017;154:1.Raiola A, Rigano MM, Calafiore R, Frusciante L, Barone A. Enhancing the healthpromoting effects of tomato fruit for biofortified food. Mediators of inflammation. 2014; Article ID 139873, 16.Raiola A, Rigano MM, Calafiore R, Frusciante L, Barone A. Enhancing the healthpromoting effects of tomato fruit for biofortified food. Mediators of inflammation. 2014; Article ID 139873, 16.Kato K, Yoshida R, Kikuzaki A et al. Molecular breeding of tomato lines for mass production of miraculin in a plant factory. J Agric Food Chem. 2010;58(17):9505- 9510.Kato K, Yoshida R, Kikuzaki A et al. Molecular breeding of tomato lines for mass production of miraculin in a plant factory. J Agric Food Chem. 2010;58(17):9505- 9510.Mashhid H; Atilla D; Babak A-M; Kamil H. Assessment of genetic diversity in tomato landraces using ISSR markers. Genetika. 2016;48(1):25-35.Mashhid H; Atilla D; Babak A-M; Kamil H. Assessment of genetic diversity in tomato landraces using ISSR markers. Genetika. 2016;48(1):25-35.Sacco A, Di Matteo A, Lombardi N et al. Quantitative trait loci pyramiding for fruit quality traits in tomato. Mol Breeding. 2013;31:217-222.Sacco A, Di Matteo A, Lombardi N et al. Quantitative trait loci pyramiding for fruit quality traits in tomato. Mol Breeding. 2013;31:217-222.Tam SM, Mhiri C, Vogelaar A et al. Comparative analyses of genetic diversities within tomato and pepper collections detected by retrotransposon-based SSAP, AFLP and SSR. Theor Appl Genet. 2005;110(5):819-831.Tam SM, Mhiri C, Vogelaar A et al. Comparative analyses of genetic diversities within tomato and pepper collections detected by retrotransposon-based SSAP, AFLP and SSR. Theor Appl Genet. 2005;110(5):819-831.Seibt KM, Wenke T, Wollrab C et al. Development and application of SINE-based markers for genotyping of potato varieties. Theor Appl Genet. 2012;125(1):185-196.Seibt KM, Wenke T, Wollrab C et al. Development and application of SINE-based markers for genotyping of potato varieties. Theor Appl Genet. 2012;125(1):185-196.Gharsallah C, Abdelkrim AB, Fakhfakh H et al. SSR marker-assisted screening of commercial tomato genotypes under salt stress. Breed Sci. 2016; 66(5): 823–830.Gharsallah C, Abdelkrim AB, Fakhfakh H et al. SSR marker-assisted screening of commercial tomato genotypes under salt stress. Breed Sci. 2016; 66(5): 823–830.Kiani G, Siahchehreh M. (2018) Genetic Diversity in Tomato Varieties Assessed by ISSR Markers. Int J Veg Sci, 2018; 24(4):353-360Kiani G, Siahchehreh M. (2018) Genetic Diversity in Tomato Varieties Assessed by ISSR Markers. Int J Veg Sci, 2018; 24(4):353-360Atherton J, Rudich J. The tomato crop: a scientific basis for improvement. Springer Science & Business Media, 2012.Atherton J, Rudich J. The tomato crop: a scientific basis for improvement. Springer Science & Business Media, 2012.El-Awady M, El-Tarras A, Hassan M. Genetic diversity and DNA fingerprint study in tomato (Solanum lycopersicum L.) cultivars grown in Egypt using simple sequence repeats (SSR) markers. African J Biotechnol. 2012;11(96):16233-16240.El-Awady M, El-Tarras A, Hassan M. Genetic diversity and DNA fingerprint study in tomato (Solanum lycopersicum L.) cultivars grown in Egypt using simple sequence repeats (SSR) markers. African J Biotechnol. 2012;11(96):16233-16240.Miskoska–Milevska E. Determination of genetic diversity among different tomato varieties using SSR markers. Acta Agriculturae Serbica. XVI. 2011;31:9-17.Miskoska–Milevska E. Determination of genetic diversity among different tomato varieties using SSR markers. Acta Agriculturae Serbica. XVI. 2011;31:9-17.Singh M, Singh NP, Arya S et al. Diversity analysis of tomato germplasm (Lycopersicom esculentum markers) using SSR. Int J Agricult Sci Res (IJASR). 2014;4(4):41-48.Singh M, Singh NP, Arya S et al. Diversity analysis of tomato germplasm (Lycopersicom esculentum markers) using SSR. Int J Agricult Sci Res (IJASR). 2014;4(4):41-48.Tester M, Langridge P. Breeding technologies to increase crop production in a changing world. Science. 2010;327:818-822.Tester M, Langridge P. Breeding technologies to increase crop production in a changing world. Science. 2010;327:818-822.

The authors declare that there are no conflicts of interest present.