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<article article-type="research-article" dtd-version="1.3" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xml:lang="ru"><front><journal-meta><journal-id journal-id-type="publisher-id">ovoshchi</journal-id><journal-title-group><journal-title xml:lang="ru">Овощи России</journal-title><trans-title-group xml:lang="en"><trans-title>Vegetable crops of Russia</trans-title></trans-title-group></journal-title-group><issn pub-type="ppub">2072-9146</issn><issn pub-type="epub">2618-7132</issn><publisher><publisher-name>Федеральный научный центр овощеводства</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="doi">10.18619/2072-9146-2020-6-51-57</article-id><article-id custom-type="elpub" pub-id-type="custom">ovoshchi-1185</article-id><article-categories><subj-group subj-group-type="heading"><subject>Research Article</subject></subj-group><subj-group subj-group-type="section-heading" xml:lang="ru"><subject>СЕЛЕКЦИЯ И СЕМЕНОВОДСТВО СЕЛЬСКОХОЗЯЙСТВЕННЫХ РАСТЕНИЙ</subject></subj-group><subj-group subj-group-type="section-heading" xml:lang="en"><subject>BREEDING AND SEED PRODUCTION OF AGRICULTURAL CROPS</subject></subj-group></article-categories><title-group><article-title>Конформационная изменчивость двойных спиралей ДНК</article-title><trans-title-group xml:lang="en"><trans-title>Conformational variability of DNA double helix</trans-title></trans-title-group></title-group><contrib-group><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0002-1134-0292</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Чесноков</surname><given-names>Ю. В.</given-names></name><name name-style="western" xml:lang="en"><surname>Chesnokov</surname><given-names>Yu. V.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Юрий Валентинович Чесноков – доктор биол. наук, директор ФГБНУ АФИ </p><p>Гражданский пр-т, д.14, г. Санкт-Петербург, 195220</p></bio><bio xml:lang="en"><p>Yuriy V. Chesnokov – Doc. Sci. (Biology), Director of Agrophysical Research Institute </p><p>14, Grazhdanskiy ave., St.-Petersburg, 195220</p></bio><email xlink:type="simple">yuv_chesnokov@agrophys.ru</email><xref ref-type="aff" rid="aff-1"/></contrib></contrib-group><aff-alternatives id="aff-1"><aff xml:lang="ru"><institution>Федеральное государственное бюджетное научное учреждение «Агрофизический научно-исследовательский институт»</institution><country>Россия</country></aff><aff xml:lang="en"><institution>Agrophysical Research Institute</institution><country>Russian Federation</country></aff></aff-alternatives><pub-date pub-type="collection"><year>2020</year></pub-date><pub-date pub-type="epub"><day>26</day><month>12</month><year>2020</year></pub-date><volume>0</volume><issue>6</issue><fpage>51</fpage><lpage>57</lpage><permissions><copyright-statement>Copyright &amp;#x00A9; Чесноков Ю.В., 2020</copyright-statement><copyright-year>2020</copyright-year><copyright-holder xml:lang="ru">Чесноков Ю.В.</copyright-holder><copyright-holder xml:lang="en">Chesnokov Y.V.</copyright-holder><license xml:lang="ru" license-type="creative-commons-attribution" xlink:href="https://creativecommons.org/licenses/by/4.0/" xlink:type="simple"><license-p>Данная работа распространяется под лицензией Creative Commons Attribution 4.0.</license-p></license><license xml:lang="en" license-type="creative-commons-attribution" xlink:href="https://creativecommons.org/licenses/by/4.0/" xlink:type="simple"><license-p>This work is licensed under a Creative Commons Attribution 4.0 License.</license-p></license></permissions><self-uri xlink:href="https://www.vegetables.su/jour/article/view/1185">https://www.vegetables.su/jour/article/view/1185</self-uri><abstract><p>Дезоксирибонуклеиновая кислота (ДНК) является одним из основных носителей наследственной информации. Структурная физико-химическая информация ДНК определяет в конечном счете строение и функционирование всех живых организмов. В ДНК же накапливаются разнообразные мутационные и происходят рекомбинационные события, которые приводят к изменчивости организмов и подлежат как естественному, так и искусственному отбору. Взаимодействие «генотип-среда» присущее всем живым организмам свойственно и ДНК, которая находится во внутриклеточном и внутриядерном физико-химическом окружении молекул воды, сахаров, ионов металлов, рН, нуклеотидов и других компонентов. Установление и изучение физико-химических свойств нативной ДНК способствует не только пониманию механизмов строения основной наследственной биомолекулы, но и выяснить их функционирование, а также взаимодействие с другими молекулами на молекулярном уровне. Обнаружение разнообразных форм двойных спиралей: A, Aʹ, B, α-Bʹ, β-Bʹ, C, Cʹ, Cʹʹ, D, E и Z наталкивает на мысль о молекулярно-генетическом разнообразии существующем на уровне ДНК и установление их структурно-функциональных особенностей способно привести к пониманию реализации генетической информации на общебиологическом уровне. Структура природных ДНК в целом, по-видимому, не зависит от последовательности и нуклеотидного состава. Для природных молекул - сателлитных ДНК с повторами или ДНК без повторов, подтверждено наличие только А-, В- и С-форм. Структура ДНК зависит не только от температуры, но и от природы присутствующих катионов. Наличие в среде определенного количества ионов металлов может приводить к переходу В-формы ДНК в Z-форму. В ↔ Zпереход модифицирует общую структуру ДНК, а, следовательно, может оказаться важным для регуляции генной экспрессии. Изучение биологической роли Z-ДНК возможно в ближайшем будущем поможет понять механизм экспрессии генов, прежде всего эпигенетического характера, который до конца пока еще не выяснен.</p></abstract><trans-abstract xml:lang="en"><p>Deoxyribonucleic acid (DNA) is one of the main carriers of hereditary information. The structural physicochemical information of DNA ultimately determines the structure and functioning of all living organisms. In DNA, various mutational events accumulate and recombination events occur, which lead to the variability of organisms and are subject to both natural and artificial selection. The interaction "genotype-environment" inherent in all living organisms is also characteristic of DNA, which is located in the intracellular and intranuclear physicochemical environment of water molecules, sugars, metal ions, pH, nucleotides and other components. The establishment and study of the physicochemical properties of native DNA contributes to not only understanding the mechanisms of the structure of the main hereditary biomolecule, but also to clarify their functioning, as well as interaction with other molecules at the molecular level. The discovery of various forms of double helices: A, Aʹ, B, α-Bʹ, β-Bʹ, C, Cʹ, Cʹʹ, D, E and Z suggests the idea of molecular genetic diversity existing at the DNA level and the establishment of their structural and functional features can lead to an understanding of the implementation of genetic information at the general biological level. The structure of natural DNA as a whole, apparently, does not depend on the sequence and nucleotide composition. For natural molecules - satellite DNA with repeats or DNA without repeats, the presence of only A-, B- and C-forms has been confirmed. The structure of DNA depends not only on temperature, but also on the nature of the cations present. The presence of a certain amount of metal ions in the medium can lead to the transition of the B-form of DNA to the Zform. The B ↔ Z transition modifies the general structure of DNA and, therefore, may be important for the regulation of gene expression. The study of the biological role of Z-DNA, possibly in the near future, will help to understand the mechanism of gene expression, primarily of an epigenetic nature, which has not yet been fully elucidated.</p></trans-abstract><kwd-group xml:lang="ru"><kwd>ДНК</kwd><kwd>физико-химическое строение</kwd><kwd>структурные переходы</kwd><kwd>регуляция генной экспрессии</kwd></kwd-group><kwd-group xml:lang="en"><kwd>DNA</kwd><kwd>physicochemical structure</kwd><kwd>structural transitions</kwd><kwd>regulation of gene expression</kwd></kwd-group></article-meta></front><back><ref-list><title>References</title><ref id="cit1"><label>1</label><citation-alternatives><mixed-citation xml:lang="ru">Сивожелезова Н.А., Мишакова В.Н. Значение открытия структуры ДНК для молекулярной генетики и сельского хозяйства. Известия Оренбургского государственного аграрного университета. 2014;(4):164-167. [Sivozhelezova N.A., Mishakova V.N. The significance of the discovery of DNA structure for molecular genetics and agriculture. Bulletin of the Orenburg State Agrarian University. 2014;(4):164-167. (in Russian)]</mixed-citation><mixed-citation xml:lang="en">Сивожелезова Н.А., Мишакова В.Н. Значение открытия структуры ДНК для молекулярной генетики и сельского хозяйства. Известия Оренбургского государственного аграрного университета. 2014;(4):164-167. [Sivozhelezova N.A., Mishakova V.N. The significance of the discovery of DNA structure for molecular genetics and agriculture. Bulletin of the Orenburg State Agrarian University. 2014;(4):164-167. (in Russian)]</mixed-citation></citation-alternatives></ref><ref id="cit2"><label>2</label><citation-alternatives><mixed-citation xml:lang="ru">Чесноков Ю.В. Закон гомологических рядов в наследственной изменчивости и молекулярная гомология генов. Сельскохозяйственная биология. 2007;(5):9-14. [Chesnokov Yu.V. Law of homologous series in hereditary variability and molecular homology of genes. Agricultural Biology. 2007;(5):9-14. (in Russian)]</mixed-citation><mixed-citation xml:lang="en">Чесноков Ю.В. Закон гомологических рядов в наследственной изменчивости и молекулярная гомология генов. Сельскохозяйственная биология. 2007;(5):9-14. [Chesnokov Yu.V. Law of homologous series in hereditary variability and molecular homology of genes. Agricultural Biology. 2007;(5):9-14. (in Russian)]</mixed-citation></citation-alternatives></ref><ref id="cit3"><label>3</label><citation-alternatives><mixed-citation xml:lang="ru">Broadhurst L., Breed M., Lowe A., Bragg J., Catullo R., Coates D.J., EnsinasViso F., Gellie N., James E., Krauss S., Potts B., Rossetto M., Shepherd M., Byrne M. Genetic diversity and structure of the Australian flora. Divers. Distrib. 2017;(23):41–52. https://doi.org/10.1111/ddi.12505</mixed-citation><mixed-citation xml:lang="en">Broadhurst L., Breed M., Lowe A., Bragg J., Catullo R., Coates D.J., EnsinasViso F., Gellie N., James E., Krauss S., Potts B., Rossetto M., Shepherd M., Byrne M. Genetic diversity and structure of the Australian flora. Divers. Distrib. 2017;(23):41–52. https://doi.org/10.1111/ddi.12505</mixed-citation></citation-alternatives></ref><ref id="cit4"><label>4</label><citation-alternatives><mixed-citation xml:lang="ru">Coates D.J., Byrne M., Moritz C. Genetic Diversity and Conservation Units: Dealing With the Species-Population Continuum in the Age of Genomics. Front. Ecol. Evol. 2018;(6):165. https://doi.org/10.3389/fevo.2018.00165</mixed-citation><mixed-citation xml:lang="en">Coates D.J., Byrne M., Moritz C. Genetic Diversity and Conservation Units: Dealing With the Species-Population Continuum in the Age of Genomics. Front. Ecol. Evol. 2018;(6):165. https://doi.org/10.3389/fevo.2018.00165</mixed-citation></citation-alternatives></ref><ref id="cit5"><label>5</label><citation-alternatives><mixed-citation xml:lang="ru">Leslie A.G.W., Arnott S., Chandrasekaran R., Ratliff R.L. Polymorphism of DNA double helices. J. Mol. Biol. 1980;(143):49-72. https://doi.org/10.1016/0022-2836(80)90124-2</mixed-citation><mixed-citation xml:lang="en">Leslie A.G.W., Arnott S., Chandrasekaran R., Ratliff R.L. Polymorphism of DNA double helices. J. Mol. Biol. 1980;(143):49-72. https://doi.org/10.1016/0022-2836(80)90124-2</mixed-citation></citation-alternatives></ref><ref id="cit6"><label>6</label><citation-alternatives><mixed-citation xml:lang="ru">Arnott S., Hukins D.W.L. Opimised parameters for a-DNA and B-DNA. Biochem. Biophys. Res. Commun. 1972;(47):1504-1509. https://doi.org/10.1016/0006-291x(72)90243-4</mixed-citation><mixed-citation xml:lang="en">Arnott S., Hukins D.W.L. Opimised parameters for a-DNA and B-DNA. Biochem. Biophys. Res. Commun. 1972;(47):1504-1509. https://doi.org/10.1016/0006-291x(72)90243-4</mixed-citation></citation-alternatives></ref><ref id="cit7"><label>7</label><citation-alternatives><mixed-citation xml:lang="ru">Arnott S., Chandrasekaran R. Fibrous polynucleotide duplexes have very polymorphic secondary structures. In Biomolecular stereodynamics (ed. R.H. Sarma). Adenine Press, New York. 1981;(I): 99-122.</mixed-citation><mixed-citation xml:lang="en">Arnott S., Chandrasekaran R. Fibrous polynucleotide duplexes have very polymorphic secondary structures. In Biomolecular stereodynamics (ed. R.H. Sarma). Adenine Press, New York. 1981;(I): 99-122.</mixed-citation></citation-alternatives></ref><ref id="cit8"><label>8</label><citation-alternatives><mixed-citation xml:lang="ru">Marvin D.A., Spencer M., Wilkins M.H.F., Hamilton L.D. The molecular configuration of DNA. III. X-ray diffraction study of the C form of the lithium salt. J. Mol. Biol. 1961;(3):547-565. https://doi.org/10.1016/s0022-2836(61)80021-1</mixed-citation><mixed-citation xml:lang="en">Marvin D.A., Spencer M., Wilkins M.H.F., Hamilton L.D. The molecular configuration of DNA. III. X-ray diffraction study of the C form of the lithium salt. J. Mol. Biol. 1961;(3):547-565. https://doi.org/10.1016/s0022-2836(61)80021-1</mixed-citation></citation-alternatives></ref><ref id="cit9"><label>9</label><citation-alternatives><mixed-citation xml:lang="ru">Arnott S., Chandrasekaran R., Hukins D.W.L., Smith P.L.C., Watts L. Structural details of a double-helix observed for DNAs containing alternating purine-pyrimidine sequences. J. Mol. Biol. 1974;(88):523-533. https://doi.org/10.1016.0022-2836(74)90499-9</mixed-citation><mixed-citation xml:lang="en">Arnott S., Chandrasekaran R., Hukins D.W.L., Smith P.L.C., Watts L. Structural details of a double-helix observed for DNAs containing alternating purine-pyrimidine sequences. J. Mol. Biol. 1974;(88):523-533. https://doi.org/10.1016.0022-2836(74)90499-9</mixed-citation></citation-alternatives></ref><ref id="cit10"><label>10</label><citation-alternatives><mixed-citation xml:lang="ru">Wang A.H.-J., Quigley G.J., Kolpak F.J., Crawford J.L., Boom J.H. van, Marel G van der, Rich A. Molecular structure of a left-handed double helical DNA fragment at atomic resolution. Nature. 1979;(282):680-686. https://doi.org/10.1038/282680a0</mixed-citation><mixed-citation xml:lang="en">Wang A.H.-J., Quigley G.J., Kolpak F.J., Crawford J.L., Boom J.H. van, Marel G van der, Rich A. Molecular structure of a left-handed double helical DNA fragment at atomic resolution. Nature. 1979;(282):680-686. https://doi.org/10.1038/282680a0</mixed-citation></citation-alternatives></ref><ref id="cit11"><label>11</label><citation-alternatives><mixed-citation xml:lang="ru">Ghosh A., Bansal M. A glossary of DNA structures from A to Z. Acta Crystallogr D Biol Crystallogr. 2003;(59):620-626. https://doi.org/10.1107/s0907444903003251</mixed-citation><mixed-citation xml:lang="en">Ghosh A., Bansal M. A glossary of DNA structures from A to Z. Acta Crystallogr D Biol Crystallogr. 2003;(59):620-626. https://doi.org/10.1107/s0907444903003251</mixed-citation></citation-alternatives></ref><ref id="cit12"><label>12</label><citation-alternatives><mixed-citation xml:lang="ru">Du Y., Zhou X. Targeting non-B-form DNA in living cells. Chem. Rec. 2013;(13):371-384. https://doi.org/10.1002/tcr.201300005</mixed-citation><mixed-citation xml:lang="en">Du Y., Zhou X. Targeting non-B-form DNA in living cells. Chem. Rec. 2013;(13):371-384. https://doi.org/10.1002/tcr.201300005</mixed-citation></citation-alternatives></ref><ref id="cit13"><label>13</label><citation-alternatives><mixed-citation xml:lang="ru">Waters J.T., Lu X.-J., Galindo-Murillo R., Gumbart J.C., Kim H.D., Cheatham T.E. III, Harvey S.C. Transitions of Double-Stranded DNA Between the A- and BForms. J. Phys. Chem B. 2016;(120):8449–8456. https://doi.org/10.1021/acs.jpcb.6b02155</mixed-citation><mixed-citation xml:lang="en">Waters J.T., Lu X.-J., Galindo-Murillo R., Gumbart J.C., Kim H.D., Cheatham T.E. III, Harvey S.C. Transitions of Double-Stranded DNA Between the A- and BForms. J. Phys. Chem B. 2016;(120):8449–8456. https://doi.org/10.1021/acs.jpcb.6b02155</mixed-citation></citation-alternatives></ref><ref id="cit14"><label>14</label><citation-alternatives><mixed-citation xml:lang="ru">Bram S. Secondary structure of DNA depends on base composition. Nature New Biol. 1971;(232):174-176. https://doi.org/10.1038/newbio232174a0</mixed-citation><mixed-citation xml:lang="en">Bram S. Secondary structure of DNA depends on base composition. Nature New Biol. 1971;(232):174-176. https://doi.org/10.1038/newbio232174a0</mixed-citation></citation-alternatives></ref><ref id="cit15"><label>15</label><citation-alternatives><mixed-citation xml:lang="ru">Bram S., Tougard P. Polymorphism of natural DNA. Nature New Biol. 1972;(239):128-131. https://doi.org/10.1038/newbio239128a0</mixed-citation><mixed-citation xml:lang="en">Bram S., Tougard P. Polymorphism of natural DNA. Nature New Biol. 1972;(239):128-131. https://doi.org/10.1038/newbio239128a0</mixed-citation></citation-alternatives></ref><ref id="cit16"><label>16</label><citation-alternatives><mixed-citation xml:lang="ru">Pilet J., Blicharski J., Brahms J. Conformations and structural transitions in polydeoxynucleotides. Biochemistry. 1975;(14):1869-1876. https://doi.org/10.1016/0022-2836(80)90124-2</mixed-citation><mixed-citation xml:lang="en">Pilet J., Blicharski J., Brahms J. Conformations and structural transitions in polydeoxynucleotides. Biochemistry. 1975;(14):1869-1876. https://doi.org/10.1016/0022-2836(80)90124-2</mixed-citation></citation-alternatives></ref><ref id="cit17"><label>17</label><citation-alternatives><mixed-citation xml:lang="ru">Gray D.M., Gall J.G., The circular dichroism spectra of three Drosophila virilis satellite DNA’s. J. Mol. Biol. 1974;(85):665-679. https://doi.org/10.1016/S0022-2836(75)80112-4</mixed-citation><mixed-citation xml:lang="en">Gray D.M., Gall J.G., The circular dichroism spectra of three Drosophila virilis satellite DNA’s. J. Mol. Biol. 1974;(85):665-679. https://doi.org/10.1016/S0022-2836(75)80112-4</mixed-citation></citation-alternatives></ref><ref id="cit18"><label>18</label><citation-alternatives><mixed-citation xml:lang="ru">Arnott S. The sequence dependence of circular dichroism spectra of DNA duplexes. Nucl. Acids Res. 1975;(2):1493-1502. https://doi.org/10.1093/nar/2.9.1493</mixed-citation><mixed-citation xml:lang="en">Arnott S. The sequence dependence of circular dichroism spectra of DNA duplexes. Nucl. Acids Res. 1975;(2):1493-1502. https://doi.org/10.1093/nar/2.9.1493</mixed-citation></citation-alternatives></ref><ref id="cit19"><label>19</label><citation-alternatives><mixed-citation xml:lang="ru">Selsing E., Arnott S. Conformations of A-T rich DNA’s. Nucl. Acids Res. 1976;(3):2443-2450. https://doi.org/10.1093/nar/3.10.2443</mixed-citation><mixed-citation xml:lang="en">Selsing E., Arnott S. Conformations of A-T rich DNA’s. Nucl. Acids Res. 1976;(3):2443-2450. https://doi.org/10.1093/nar/3.10.2443</mixed-citation></citation-alternatives></ref><ref id="cit20"><label>20</label><citation-alternatives><mixed-citation xml:lang="ru">Premilat S., Albiser G. X-ray diffraction study of three DNA fibers with different base composition. J. Mol. Biol. 1975;(99):27-36. https://doi.org/10.1006/viro.2002.1602</mixed-citation><mixed-citation xml:lang="en">Premilat S., Albiser G. X-ray diffraction study of three DNA fibers with different base composition. J. Mol. Biol. 1975;(99):27-36. https://doi.org/10.1006/viro.2002.1602</mixed-citation></citation-alternatives></ref><ref id="cit21"><label>21</label><citation-alternatives><mixed-citation xml:lang="ru">Klug A., Jack A., Viswamitra M.A., Kennard O., Shakked Z., Steitz T.A. A hypothesis on a specific sequence-dependent conformation of DNA and its relation to the binding of the lac-repressor protein. J. Mol. Biol. 1979;(131):669-680. https://doi.org/10.1016/0022-2836(84)90176-1</mixed-citation><mixed-citation xml:lang="en">Klug A., Jack A., Viswamitra M.A., Kennard O., Shakked Z., Steitz T.A. A hypothesis on a specific sequence-dependent conformation of DNA and its relation to the binding of the lac-repressor protein. J. Mol. Biol. 1979;(131):669-680. https://doi.org/10.1016/0022-2836(84)90176-1</mixed-citation></citation-alternatives></ref><ref id="cit22"><label>22</label><citation-alternatives><mixed-citation xml:lang="ru">Pilet J., Brahms J. Dependence of B-A conformational change in DNA on base composition. Nature New Biol. 1972;(236):99-100. https://doi.org/10.1038/newbio236099a0</mixed-citation><mixed-citation xml:lang="en">Pilet J., Brahms J. Dependence of B-A conformational change in DNA on base composition. Nature New Biol. 1972;(236):99-100. https://doi.org/10.1038/newbio236099a0</mixed-citation></citation-alternatives></ref><ref id="cit23"><label>23</label><citation-alternatives><mixed-citation xml:lang="ru">Drew H., Takano T., Tapaka S., Itakura K., Dickerson R.E. High-salt d(CpGpCpG): A left-handed Zʹ DNA double helix. Nature. 1980;(286):567-573. https://doi.org/10.1038/286567a0</mixed-citation><mixed-citation xml:lang="en">Drew H., Takano T., Tapaka S., Itakura K., Dickerson R.E. High-salt d(CpGpCpG): A left-handed Zʹ DNA double helix. Nature. 1980;(286):567-573. https://doi.org/10.1038/286567a0</mixed-citation></citation-alternatives></ref><ref id="cit24"><label>24</label><citation-alternatives><mixed-citation xml:lang="ru">Svozil D., Kalina J., Omelka M., Schneider B. DNA conformations and their sequence preferences. Nucleic Acids Res. 2008;(36):3690–3706. https://doi.org/10.1093/nar/gkn260</mixed-citation><mixed-citation xml:lang="en">Svozil D., Kalina J., Omelka M., Schneider B. DNA conformations and their sequence preferences. Nucleic Acids Res. 2008;(36):3690–3706. https://doi.org/10.1093/nar/gkn260</mixed-citation></citation-alternatives></ref><ref id="cit25"><label>25</label><citation-alternatives><mixed-citation xml:lang="ru">Dans P.D., Balaceanu A., Pasi M., Patelli A.S., Petkevičiūtė D., Walther J., Hospital A., Bayarri G., Lavery R., Maddocks J.H., Orozco M. The static and dynamic structural heterogeneities of B-DNA: extending Calladine–Dickerson rules. Nucleic Acids Res. 2019;(47):11090–11102. https://doi.org/10.1093/nar/gkz905</mixed-citation><mixed-citation xml:lang="en">Dans P.D., Balaceanu A., Pasi M., Patelli A.S., Petkevičiūtė D., Walther J., Hospital A., Bayarri G., Lavery R., Maddocks J.H., Orozco M. The static and dynamic structural heterogeneities of B-DNA: extending Calladine–Dickerson rules. Nucleic Acids Res. 2019;(47):11090–11102. https://doi.org/10.1093/nar/gkz905</mixed-citation></citation-alternatives></ref><ref id="cit26"><label>26</label><citation-alternatives><mixed-citation xml:lang="ru">Langridge R., Marvin D.A., Seeds W.E., Wilson H.R., Hooper C.W., Wilkins M.H.F., Hamilton L.D. The molecular configuration of deoxyribonucleic acid. II. Molecular models and their Fourier transforms. J. Mol. Biol. 1960;(2):38-64. https://doi.org/10.1016/0022-2836(79)90507-2</mixed-citation><mixed-citation xml:lang="en">Langridge R., Marvin D.A., Seeds W.E., Wilson H.R., Hooper C.W., Wilkins M.H.F., Hamilton L.D. The molecular configuration of deoxyribonucleic acid. II. Molecular models and their Fourier transforms. J. Mol. Biol. 1960;(2):38-64. https://doi.org/10.1016/0022-2836(79)90507-2</mixed-citation></citation-alternatives></ref><ref id="cit27"><label>27</label><citation-alternatives><mixed-citation xml:lang="ru">Marvin D.A., Spencer M., Wilkins M.H.F., Hamilton L.D. The molecular configuration of DNA. III. X-ray diffraction study of the C form of the lithium salt. J. Mol. Biol. 1961;(3):547-565. https://doi.org/10.1016/S0022-2836(61)80021-1</mixed-citation><mixed-citation xml:lang="en">Marvin D.A., Spencer M., Wilkins M.H.F., Hamilton L.D. The molecular configuration of DNA. III. X-ray diffraction study of the C form of the lithium salt. J. Mol. Biol. 1961;(3):547-565. https://doi.org/10.1016/S0022-2836(61)80021-1</mixed-citation></citation-alternatives></ref><ref id="cit28"><label>28</label><citation-alternatives><mixed-citation xml:lang="ru">Fuller W., Wilkins M.H.F., Wilson H.R., Hamilton L.D. The molecular configuration of deoxyribonucleic acid. IV. X-ray diffraction study of the A-form. J. Mol. Biol. 1965;(12):60-80. https://doi.org/10.1016/s0022-2836(65)80282-0</mixed-citation><mixed-citation xml:lang="en">Fuller W., Wilkins M.H.F., Wilson H.R., Hamilton L.D. The molecular configuration of deoxyribonucleic acid. IV. X-ray diffraction study of the A-form. J. Mol. Biol. 1965;(12):60-80. https://doi.org/10.1016/s0022-2836(65)80282-0</mixed-citation></citation-alternatives></ref><ref id="cit29"><label>29</label><citation-alternatives><mixed-citation xml:lang="ru">Anderson P., Bauer W. Supercoiling in closed circular DNA: dependence upon ion type and concentration. Biochemistry. 1978;(17):594-601. https://doi.org/10.1021/bi00597a006</mixed-citation><mixed-citation xml:lang="en">Anderson P., Bauer W. Supercoiling in closed circular DNA: dependence upon ion type and concentration. Biochemistry. 1978;(17):594-601. https://doi.org/10.1021/bi00597a006</mixed-citation></citation-alternatives></ref><ref id="cit30"><label>30</label><citation-alternatives><mixed-citation xml:lang="ru">Chan A., Kilkuskie R., Hanlon S. Correlation between the duplex winding angle and the circular dichroism spectrum of calf thymus DNA. Biochemistry. 1979;(18):84-91. https://doi.org/10.1021/bi00568a013</mixed-citation><mixed-citation xml:lang="en">Chan A., Kilkuskie R., Hanlon S. Correlation between the duplex winding angle and the circular dichroism spectrum of calf thymus DNA. Biochemistry. 1979;(18):84-91. https://doi.org/10.1021/bi00568a013</mixed-citation></citation-alternatives></ref><ref id="cit31"><label>31</label><citation-alternatives><mixed-citation xml:lang="ru">Ivanov V.I., Minchenkova L.E., Schyolkina A.K., Poletayev A.I. Different conformations of double stranded nucleic acids in solution as revealed by circular dichroism. Biopolymers. 1973;(12):89-100 https://doi.org/10.1002/bip.1973.360120109</mixed-citation><mixed-citation xml:lang="en">Ivanov V.I., Minchenkova L.E., Schyolkina A.K., Poletayev A.I. Different conformations of double stranded nucleic acids in solution as revealed by circular dichroism. Biopolymers. 1973;(12):89-100 https://doi.org/10.1002/bip.1973.360120109</mixed-citation></citation-alternatives></ref><ref id="cit32"><label>32</label><citation-alternatives><mixed-citation xml:lang="ru">Weiner P.K., Langridge R., Blaney J.M., Schaefer R., Kollman P. Electrostatic potential molecular surfaces. Proc. Natl. Acad. Sci. USA. 1982;(79):3754-3758. https://doi.org/10.1073/pnas.79.12.3754</mixed-citation><mixed-citation xml:lang="en">Weiner P.K., Langridge R., Blaney J.M., Schaefer R., Kollman P. Electrostatic potential molecular surfaces. Proc. Natl. Acad. Sci. USA. 1982;(79):3754-3758. https://doi.org/10.1073/pnas.79.12.3754</mixed-citation></citation-alternatives></ref><ref id="cit33"><label>33</label><citation-alternatives><mixed-citation xml:lang="ru">Barone G., Guerra C.F., Bickelhaupt F.M. B-DNA structure and stability as function of nucleic acid composition: Dispersion-corrected DFT study of dinucleoside monophosphate single and double strands. Chemistry Open. 2013;(2):186-193. https://doi.org/10.1002/open.201300019</mixed-citation><mixed-citation xml:lang="en">Barone G., Guerra C.F., Bickelhaupt F.M. B-DNA structure and stability as function of nucleic acid composition: Dispersion-corrected DFT study of dinucleoside monophosphate single and double strands. Chemistry Open. 2013;(2):186-193. https://doi.org/10.1002/open.201300019</mixed-citation></citation-alternatives></ref><ref id="cit34"><label>34</label><citation-alternatives><mixed-citation xml:lang="ru">Wang J.C., Jacobsen J.H., Saucier J.-M. Physicochemical studies on interaction between DNA and RNA polymerase. Unwinding of the DNA helix by Escherichia coli RNA polymerase. Nucl. Acids Res. 1977;(4):1225-1241. https://doi.org/10.1093/nar/4.5.1225</mixed-citation><mixed-citation xml:lang="en">Wang J.C., Jacobsen J.H., Saucier J.-M. Physicochemical studies on interaction between DNA and RNA polymerase. Unwinding of the DNA helix by Escherichia coli RNA polymerase. Nucl. Acids Res. 1977;(4):1225-1241. https://doi.org/10.1093/nar/4.5.1225</mixed-citation></citation-alternatives></ref><ref id="cit35"><label>35</label><citation-alternatives><mixed-citation xml:lang="ru">Dickerson R.E., Drew H.R., Conner B.N., Wing R.M., Fratini A.V., Kopka M.L. The anatomy of A-, B-, and Z-DNA. Science. 1982;(216):475-485. https://doi.org/10.1126/science.7071593</mixed-citation><mixed-citation xml:lang="en">Dickerson R.E., Drew H.R., Conner B.N., Wing R.M., Fratini A.V., Kopka M.L. The anatomy of A-, B-, and Z-DNA. Science. 1982;(216):475-485. https://doi.org/10.1126/science.7071593</mixed-citation></citation-alternatives></ref><ref id="cit36"><label>36</label><citation-alternatives><mixed-citation xml:lang="ru">Мокульский М.А., Капитонова К.А., Мокульская Т.Д. Вторичная структура ДНК фага Т2. Мол. Биол. 1972;(6):34-38. [Mokulsky M.A., Kapitonova K.A., Mokulskaya T.D. Secondary structure of T2 phage DNA. Mol. Biol. 1972;(6:)34-38. (in Russian)]</mixed-citation><mixed-citation xml:lang="en">Мокульский М.А., Капитонова К.А., Мокульская Т.Д. Вторичная структура ДНК фага Т2. Мол. Биол. 1972;(6):34-38. [Mokulsky M.A., Kapitonova K.A., Mokulskaya T.D. Secondary structure of T2 phage DNA. Mol. Biol. 1972;(6:)34-38. (in Russian)]</mixed-citation></citation-alternatives></ref><ref id="cit37"><label>37</label><citation-alternatives><mixed-citation xml:lang="ru">Arnot S., Selsing E. The conformation of C-DNA. J. Mol. Biol. 1975;(98):265- 269. https://doi.org/10.1016/S0022-2836(75)80115-X</mixed-citation><mixed-citation xml:lang="en">Arnot S., Selsing E. The conformation of C-DNA. J. Mol. Biol. 1975;(98):265- 269. https://doi.org/10.1016/S0022-2836(75)80115-X</mixed-citation></citation-alternatives></ref><ref id="cit38"><label>38</label><citation-alternatives><mixed-citation xml:lang="ru">Brahms J., Pilet J., Lan T.-T.P., Hill L.R. Direct evidence of the C-like form of sodium deoxyribonucleate. Proc. Natl. Acad. Sci. USA. 1973;(70):3352-3355. https://doi.org/10.1073/pnas.70.12.3352</mixed-citation><mixed-citation xml:lang="en">Brahms J., Pilet J., Lan T.-T.P., Hill L.R. Direct evidence of the C-like form of sodium deoxyribonucleate. Proc. Natl. Acad. Sci. USA. 1973;(70):3352-3355. https://doi.org/10.1073/pnas.70.12.3352</mixed-citation></citation-alternatives></ref><ref id="cit39"><label>39</label><citation-alternatives><mixed-citation xml:lang="ru">Rhodes N.J., Mahendrasingam A., Pigram W.J., Fuller W., Brahms J., Vergne J.,Warren R.A.J. The C conformation in low salt form of sodium DNA. Nature. 1982;(296):267-269. https://doi.org/10.1038/296267a0</mixed-citation><mixed-citation xml:lang="en">Rhodes N.J., Mahendrasingam A., Pigram W.J., Fuller W., Brahms J., Vergne J.,Warren R.A.J. The C conformation in low salt form of sodium DNA. Nature. 1982;(296):267-269. https://doi.org/10.1038/296267a0</mixed-citation></citation-alternatives></ref><ref id="cit40"><label>40</label><citation-alternatives><mixed-citation xml:lang="ru">Ussery D.W. DNA Structure: A-, B- and Z-DNA helix families. Encyclopedia of Life Sciences. Macmillan Publishers Ltd, Nature Publishing Group. 2002. P.1-7. https://doi.org/10.1038/npg.els.0003122</mixed-citation><mixed-citation xml:lang="en">Ussery D.W. DNA Structure: A-, B- and Z-DNA helix families. Encyclopedia of Life Sciences. Macmillan Publishers Ltd, Nature Publishing Group. 2002. P.1-7. https://doi.org/10.1038/npg.els.0003122</mixed-citation></citation-alternatives></ref><ref id="cit41"><label>41</label><citation-alternatives><mixed-citation xml:lang="ru">Pohl F.M., Jovin T.M. Salt-induced co-operative conformational change of a synthetic DNA: equilibrium and kinetic studies with poly d(G-C). J. Mol. Biol. 1972;(67):375-396. https://doi.org/10.1016/0022-2836(72)90457-3</mixed-citation><mixed-citation xml:lang="en">Pohl F.M., Jovin T.M. Salt-induced co-operative conformational change of a synthetic DNA: equilibrium and kinetic studies with poly d(G-C). J. Mol. Biol. 1972;(67):375-396. https://doi.org/10.1016/0022-2836(72)90457-3</mixed-citation></citation-alternatives></ref><ref id="cit42"><label>42</label><citation-alternatives><mixed-citation xml:lang="ru">Razin A., Riggs A.D. DNA methylation and gene function. Science. 1980;(210):604-610. https://doi.org./10.1126/science.6254144</mixed-citation><mixed-citation xml:lang="en">Razin A., Riggs A.D. DNA methylation and gene function. Science. 1980;(210):604-610. https://doi.org./10.1126/science.6254144</mixed-citation></citation-alternatives></ref><ref id="cit43"><label>43</label><citation-alternatives><mixed-citation xml:lang="ru">Behe M., Felsenfeld G. Effects on methylation on a synthetic polynucleotide: The B-Z transition in poly(dG-m5C) • poly(dG-m5C). Proc. Natl. Acad. Sci. USA. 1981;(78):1619-1623. https://doi.org/10.1073/pnas.78.3.1619</mixed-citation><mixed-citation xml:lang="en">Behe M., Felsenfeld G. Effects on methylation on a synthetic polynucleotide: The B-Z transition in poly(dG-m5C) • poly(dG-m5C). Proc. Natl. Acad. Sci. USA. 1981;(78):1619-1623. https://doi.org/10.1073/pnas.78.3.1619</mixed-citation></citation-alternatives></ref><ref id="cit44"><label>44</label><citation-alternatives><mixed-citation xml:lang="ru">Sande J.H. van de, Jovin T.M. Z*DANN, the left-handed helical from of poly[d(G-C)] in MgCl2-ethanol, is biologically active. EMBO J. 1982;(1):115-120. https://doi.org/10.1002/j.1460-2075.1982.tb01133.x</mixed-citation><mixed-citation xml:lang="en">Sande J.H. van de, Jovin T.M. Z*DANN, the left-handed helical from of poly[d(G-C)] in MgCl2-ethanol, is biologically active. EMBO J. 1982;(1):115-120. https://doi.org/10.1002/j.1460-2075.1982.tb01133.x</mixed-citation></citation-alternatives></ref><ref id="cit45"><label>45</label><citation-alternatives><mixed-citation xml:lang="ru">Klysik J., Stirdivant S.M., Larson J.E., Hart P.A., Wells R.D. Left-handed DNA in restriction fragments and a recombinant plasmid. Nature. 1981;(290):672-677. https://doi.org/10.1038/290672a0</mixed-citation><mixed-citation xml:lang="en">Klysik J., Stirdivant S.M., Larson J.E., Hart P.A., Wells R.D. Left-handed DNA in restriction fragments and a recombinant plasmid. Nature. 1981;(290):672-677. https://doi.org/10.1038/290672a0</mixed-citation></citation-alternatives></ref><ref id="cit46"><label>46</label><citation-alternatives><mixed-citation xml:lang="ru">Singleton C.K., Klysik J., Stirdivant S.M., Wells R.D. Left-handed Z-DNA is induced by supercoiling in physiological ionic conditions. Nature. 1982;(299):312- 316. https://doi.org/10.1038/299312a0</mixed-citation><mixed-citation xml:lang="en">Singleton C.K., Klysik J., Stirdivant S.M., Wells R.D. Left-handed Z-DNA is induced by supercoiling in physiological ionic conditions. Nature. 1982;(299):312- 316. https://doi.org/10.1038/299312a0</mixed-citation></citation-alternatives></ref><ref id="cit47"><label>47</label><citation-alternatives><mixed-citation xml:lang="ru">Santella R.M., Grunberger D., Weinstein I.B., Rich A. Induction of the Z conformation of poly(dG-dC) • poly(dG-dC) by binding of N-2-acetiylaminofluorene to guanine residues. Proc. Natl. Acad. Sci. USA. 1981;(78):1451-1455. https://doi.org/10.1073/pnas.78.3.1451</mixed-citation><mixed-citation xml:lang="en">Santella R.M., Grunberger D., Weinstein I.B., Rich A. Induction of the Z conformation of poly(dG-dC) • poly(dG-dC) by binding of N-2-acetiylaminofluorene to guanine residues. Proc. Natl. Acad. Sci. USA. 1981;(78):1451-1455. https://doi.org/10.1073/pnas.78.3.1451</mixed-citation></citation-alternatives></ref><ref id="cit48"><label>48</label><citation-alternatives><mixed-citation xml:lang="ru">Job D., Marmillot P., Job C., Jovin T.M. Transcription of left-handed Z-DNA templates: increased rate of single-step addition reactions catalyzed by wheat germ RNA polymerase II. Biochemistry. 1988;(27):6371-6378. https://doi.org/10.1021/bi00417a027</mixed-citation><mixed-citation xml:lang="en">Job D., Marmillot P., Job C., Jovin T.M. Transcription of left-handed Z-DNA templates: increased rate of single-step addition reactions catalyzed by wheat germ RNA polymerase II. Biochemistry. 1988;(27):6371-6378. https://doi.org/10.1021/bi00417a027</mixed-citation></citation-alternatives></ref><ref id="cit49"><label>49</label><citation-alternatives><mixed-citation xml:lang="ru">Ferl R.J., Paul A.L. Chemical detection of Z-DNA within the maize Adh1 promoter. Plant Mol. Biol. 1992;(18):1181-1184. https://doi.org/10.1007/BF00047722</mixed-citation><mixed-citation xml:lang="en">Ferl R.J., Paul A.L. Chemical detection of Z-DNA within the maize Adh1 promoter. Plant Mol. Biol. 1992;(18):1181-1184. https://doi.org/10.1007/BF00047722</mixed-citation></citation-alternatives></ref><ref id="cit50"><label>50</label><citation-alternatives><mixed-citation xml:lang="ru">Cerna A., Cuadrado A., Jouve N., Diaz dela Espina S.M., De la Torre C. ZDNA, a new in situ marker for transcription. Eur. J. Histochem. 2004;(48):49-56. https://doi.org/10.4081/856</mixed-citation><mixed-citation xml:lang="en">Cerna A., Cuadrado A., Jouve N., Diaz dela Espina S.M., De la Torre C. ZDNA, a new in situ marker for transcription. Eur. J. Histochem. 2004;(48):49-56. https://doi.org/10.4081/856</mixed-citation></citation-alternatives></ref><ref id="cit51"><label>51</label><citation-alternatives><mixed-citation xml:lang="ru">Nicol J., Behe M., Felsenfeld G. Effect of the B-Z transition in poly(dG-dm5C) • poly(dG-dm5C) on nucleosome formation. Proc. Natl. Acad. Sci. USA. 1982;(79):1771-1775. https://doi.org/10.1073/pnas.79.6.1771</mixed-citation><mixed-citation xml:lang="en">Nicol J., Behe M., Felsenfeld G. Effect of the B-Z transition in poly(dG-dm5C) • poly(dG-dm5C) on nucleosome formation. Proc. Natl. Acad. Sci. USA. 1982;(79):1771-1775. https://doi.org/10.1073/pnas.79.6.1771</mixed-citation></citation-alternatives></ref><ref id="cit52"><label>52</label><citation-alternatives><mixed-citation xml:lang="ru">Sande J.H. van de, Jovin T.M. Z*-DNA, the left-handed helical form of poly[d(GC)] in MgCl2-ethanol, is biologically active. EMBO J. 1982;(1):115-120. https://doi.org/10.1002/j.1460-2075.1982.tb01133.x</mixed-citation><mixed-citation xml:lang="en">Sande J.H. van de, Jovin T.M. Z*-DNA, the left-handed helical form of poly[d(GC)] in MgCl2-ethanol, is biologically active. EMBO J. 1982;(1):115-120. https://doi.org/10.1002/j.1460-2075.1982.tb01133.x</mixed-citation></citation-alternatives></ref><ref id="cit53"><label>53</label><citation-alternatives><mixed-citation xml:lang="ru">Zhou C., Zhou F., Xu Y. Comparative analyses of distributions and functions of Z-DNA in Arabidopsis and rice. Genomics. 2009;(93):383–391. https://doi.org/10.1016/j.ygeno.2008.11.012</mixed-citation><mixed-citation xml:lang="en">Zhou C., Zhou F., Xu Y. Comparative analyses of distributions and functions of Z-DNA in Arabidopsis and rice. Genomics. 2009;(93):383–391. https://doi.org/10.1016/j.ygeno.2008.11.012</mixed-citation></citation-alternatives></ref><ref id="cit54"><label>54</label><citation-alternatives><mixed-citation xml:lang="ru">Vongsutilers V., Shinohara Y., Kawai G. Epigenetic TET-catalyzed oxidative products of 5‑methylcytosine impede Z‑DNA formation of CG decamers. ACS Omega. 2020;(5):8056−8064. https://doi.org/10.1021/acsomega.0c00120</mixed-citation><mixed-citation xml:lang="en">Vongsutilers V., Shinohara Y., Kawai G. Epigenetic TET-catalyzed oxidative products of 5‑methylcytosine impede Z‑DNA formation of CG decamers. ACS Omega. 2020;(5):8056−8064. https://doi.org/10.1021/acsomega.0c00120</mixed-citation></citation-alternatives></ref></ref-list><fn-group><fn fn-type="conflict"><p>The authors declare that there are no conflicts of interest present.</p></fn></fn-group></back></article>
